Chip ID (Array) / Flow Cell ID-Lane# (Sequencing):
Cell Line / Cell Source / Patient:
Differentiation State / Cell Type:
Array Design Name:
Mouse Genome 430 2.0
Max Y Scale (Float, 1.0 - 10.0):
An average of replicates
Positive Data Values Only
Affymetrix GeneChip MOE 430 2.0:
45,037 probe sets analyze the expression level of over 39,000 transcripts and variants from over 34,000 well characterized mouse genes with overlap. After exclusion of overlap and non-RefSeq genes, probe sets that correspond to 15,143 unique mouse mm8 RefSeq genes were selected, assigned mm8 genome coordinates, and PLIER (Probe Logarithmic Intensity Error algorithm)-normalized signal intensity values are presented. Present (transcriptionally active) and absent (inactive) calls are generated by MAS5.0 (Affymetrix).
Partial Genome Dataset?:
Public: Data must be accompanied by a citation and is available to all visitors.
Private: Data is available to all logged-in users.
Uber Private: Data is restricted to the uploading user and any designated collaborators.
An in-press or published reference must be included to make Public datasets viewable.
Hiratani I, Ryba T, Itoh M, Yokochi T, Schwaiger M, Chang CW, Lyou Y, Townes TM, Schübeler D, Gilbert DM (2008) Global reorganization of replication domains during embryonic stem cell differentiation. PLoS Biology 6:e245.