Data Set Details

Owner:David Gilbert
Species:Mus musculus
Chip ID (Array) / Flow Cell ID-Lane# (Sequencing):D3ESC1441002&1442002CGH
Order ID:7972
Cell Line / Cell Source / Patient:D3
Differentiation State / Cell Type:ESC
Array Design Name:2006-07-26_MM8_WG_CGH
Max Y Scale (Float, 1.0 - 10.0):2.5
Replicates:An average of replicates
Data Type:RT
Data Format:Positive and Negative Data Values
Comments:2006-07-26_MM8_WG_CGH: CGH design for whole mouse genome (mm8; NCBI Build 36). Probes selected from mm8_tiling database using 5250 bp interval and 500 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 5756 bp (mean); 5782 bp (median).
Partial Genome Dataset?:No
  • Public: Data must be accompanied by a citation and is available to all visitors.
  • Private: Data is available to all logged-in users.
  • Uber Private: Data is restricted to the uploading user and any designated collaborators.
  • An in-press or published reference must be included to make Public datasets viewable.

Citation:Hiratani I, Ryba T, Itoh M, Yokochi T, Schwaiger M, Chang CW, Lyou Y, Townes TM, Schübeler D, Gilbert DM (2008) Global reorganization of replication domains during embryonic stem cell differentiation. PLoS Biology 6:e245.
Data Security Level:Public

News & Events


Datasets need to be updated.

Click on X (right-top) or Click Out from the popup to close the popup!