Chip ID (Array) / Flow Cell ID-Lane# (Sequencing):
Cell Line / Cell Source / Patient:
Differentiation State / Cell Type:
Array Design Name:
Max Y Scale (Float, 1.0 - 10.0):
An average of replicates
iPSC is from Hiratani et al PLoS Biol (Tim Townes' iPSC line) and is an average of two replicates (Array IDs 8915902 & 9321702).
Positive and Negative Data Values
2006-07-26_MM8_WG_CGH: CGH design for whole mouse genome (mm8; NCBI Build 36). Probes selected from mm8_tiling database using 5250 bp interval and 500 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 5756 bp (mean); 5782 bp (median).
Partial Genome Dataset?:
Public: Data must be accompanied by a citation and is available to all visitors.
Private: Data is available to all logged-in users.
Uber Private: Data is restricted to the uploading user and any designated collaborators.
An in-press or published reference must be included to make Public datasets viewable.
Hiratani I, Ryba T, Itoh M, Yokochi T, Schwaiger M, Chang CW, Lyou Y, Townes TM, Schübeler D, Gilbert DM (2008) Global reorganization of replication domains during embryonic stem cell differentiation. PLoS Biology 6:e245.