Data Set Details

Owner:David Gilbert
Species:Mus musculus
Chip ID (Array) / Flow Cell ID-Lane# (Sequencing):D3EBM3_3209702&3210702CGH
Order ID:9914
Cell Line / Cell Source / Patient:D3
Differentiation State / Cell Type:Smooth Muscle
Array Design Name:2006-07-26_MM8_WG_CGH
Max Y Scale (Float, 1.0 - 10.0):2.5
Replicates:An average of replicates
Data Type:RT
Data Format:Positive and Negative Data Values
Comments:2006-07-26_MM8_WG_CGH: CGH design for whole mouse genome (mm8; NCBI Build 36). Probes selected from mm8_tiling database using 5250 bp interval and 500 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 5756 bp (mean); 5782 bp (median).
Partial Genome Dataset?:No
  • Public: Data must be accompanied by a citation and is available to all visitors.
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Citation:Hiratani I, Ryba T, Itoh M, Rathjen J, Kulik M, Papp B, Fussner E, Bazett-Jones DP, Plath K, Dalton S, Rathjen PD, Gilbert DM (2010) Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis. Genome Research 20:155-169.
Data Security Level:Public

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