Data Set Details

Owner:David Gilbert
Species:Mus musculus
Build:mm8
Platform:Nimblegen
Chip ID (Array) / Flow Cell ID-Lane# (Sequencing):MEFmale090506_304037_4
Order ID:19184
Cell Line / Cell Source / Patient:MEF
Differentiation State / Cell Type:MEF
Array Design Name:2006-07-26_MM8_WG_CGH
Gender:Male
Max Y Scale (Float, 1.0 - 10.0):2.5
Replicates:An individual replicate
Data Type:RT
Data Format:Positive and Negative Data Values
Comments:2006-07-26_MM8_WG_CGH: CGH design for whole mouse genome (mm8; NCBI Build 36). Probes selected from mm8_tiling database using 5250 bp interval and 500 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 5756 bp (mean); 5782 bp (median).
Partial Genome Dataset?:No
  • Public: Data must be accompanied by a citation and is available to all visitors.
  • Private: Data is available to all logged-in users.
  • Uber Private: Data is restricted to the uploading user and any designated collaborators.
  • An in-press or published reference must be included to make Public datasets viewable.

Citation:Hiratani I, Ryba T, Itoh M, Rathjen J, Kulik M, Papp B, Fussner E, Bazett-Jones DP, Plath K, Dalton S, Rathjen PD, Gilbert DM (2010) Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis. Genome Research 20:155-169.
Data Security Level:Public

News & Events

x

Datasets need to be updated.

Click on X (right-top) or Click Out from the popup to close the popup!